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2020 GITHUB_TOKEN : ${{ secrets.GITHUB_TOKEN }}
2121 VALIDATE_SNAKEMAKE_SNAKEFMT : true
22-
23- Linting :
24- runs-on : ubuntu-latest
25- steps :
26- - uses : actions/checkout@v2
27- - name : Lint workflow
28- uses : snakemake/snakemake-github-action@v1.24.0
29- with :
30- directory : .
31- snakefile : src/foldtree/workflow/fold_tree
32- args : " --lint"
33-
34- Testing :
35- runs-on : ubuntu-latest
36- needs :
37- - Linting
38- - Formatting
39- steps :
40- - uses : actions/checkout@v2
41-
42- - name : Test workflow
43- uses : snakemake/snakemake-github-action@v1.24.0
44- with :
45- directory : .test
46- snakefile : workflow/Snakefile
47- args : " --use-conda --show-failed-logs --cores 3 --conda-cleanup-pkgs cache --all-temp"
48-
49- - name : Test report
50- uses : snakemake/snakemake-github-action@v1.24.0
51- with :
52- directory : .test
53- snakefile : workflow/Snakefile
54- args : " --report report.zip"
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