DataLab is not compatible with scikit-image 0.26 #289
Description
Testing DataLab with scikit-image 0.26 leads to:
- Multiple failures
- Segmentation fault
pytest-xvfb could not find Xvfb. You can install it to prevent windows from being shown.
================================================================== test session starts ===================================================================
platform linux -- Python 3.13.7, pytest-9.0.2, pluggy-1.6.0
DataLab 1.0.3 [Plugins: Test data 1.0.0]
sigima 1.0.5,
guidata 3.13.4, PlotPy 2.8.3
PythonQwt 0.15.0, PyQt5 5.15.11 [Qt version: 5.15.14]
NumPy 2.4.0, SciPy 1.16.3, h5py 3.15.1, scikit-image 0.26.0
Environment variables:
PYTHONPATH:
/home/praybaut/DataLab
QT_API: pyqt5
QT_QPA_PLATFORM: offscreen
Test paths:
/home/praybaut/datalab-env313/lib/python3.13/site-packages/sigima/data/tests
/home/praybaut/DataLab/datalab/data/tests
Git information:
DataLab - Branch: main, Commit: 3e2ead2a
Message: fix(ci): update Python version matrix and add numpy/scikit-i[…]
rootdir: /home/praybaut/DataLab
configfile: pyproject.toml
plugins: xvfb-3.1.1
collected 228 items
datalab/tests/backbone/config_unit_test.py . [ 0%]
datalab/tests/backbone/config_versioning_unit_test.py . [ 0%]
datalab/tests/backbone/dictlistserial_app_test.py . [ 1%]
datalab/tests/backbone/errorcatcher_unit_test.py . [ 1%]
datalab/tests/backbone/errormsgbox_unit_test.py . [ 2%]
datalab/tests/backbone/main_app_test.py . [ 2%]
datalab/tests/backbone/procisolation_unit_test.py . [ 3%]
datalab/tests/backbone/strings_unit_test.py .. [ 3%]
datalab/tests/backbone/title_formatting_unit_test.py .. [ 4%]
datalab/tests/features/applauncher/launcher1_app_test.py . [ 5%]
datalab/tests/features/applauncher/launcher2_app_test.py . [ 5%]
datalab/tests/features/common/add_metadata_app_test.py .. [ 6%]
datalab/tests/features/common/add_metadata_unit_test.py ...... [ 9%]
datalab/tests/features/common/annotations_management_unit_test.py .... [ 10%]
datalab/tests/features/common/auto_analysis_recompute_unit_test.py FFF [ 12%]
datalab/tests/features/common/coordutils_unit_test.py ........ [ 15%]
datalab/tests/features/common/createobject_unit_test.py .. [ 16%]
datalab/tests/features/common/geometry_results_app_test.py . [ 17%]
datalab/tests/features/common/interactive_processing_test.py ..................... [ 26%]
datalab/tests/features/common/io_app_test.py . [ 26%]
datalab/tests/features/common/large_results_app_test.py . [ 27%]
datalab/tests/features/common/metadata_all_patterns_test.py . [ 27%]
datalab/tests/features/common/metadata_app_test.py F [ 28%]
datalab/tests/features/common/metadata_io_unit_test.py . [ 28%]
datalab/tests/features/common/misc_app_test.py . [ 28%]
datalab/tests/features/common/multiple_geometry_results_unit_test.py .. [ 29%]
datalab/tests/features/common/multiple_table_results_unit_test.py . [ 30%]
datalab/tests/features/common/operation_modes_app_test.py .... [ 32%]
datalab/tests/features/common/plot_results_app_test.py ..F. [ 33%]
datalab/tests/features/common/reorder_app_test.py . [ 34%]
datalab/tests/features/common/result_deletion_unit_test.py F.FF [ 35%]
datalab/tests/features/common/result_merged_label_unit_test.py . [ 36%]
datalab/tests/features/common/result_shape_settings_unit_test.py .F. [ 37%]
datalab/tests/features/common/roi_plotitem_unit_test.py .. [ 38%]
datalab/tests/features/common/roieditor_unit_test.py .. [ 39%]
datalab/tests/features/common/save_to_dir_app_test.py .. [ 40%]
datalab/tests/features/common/save_to_dir_unit_test.py ........ [ 43%]
datalab/tests/features/common/stat_app_test.py . [ 44%]
datalab/tests/features/common/stats_tools_unit_test.py . [ 44%]
datalab/tests/features/common/table_results_app_test.py Segmentation fault (core dumped)