python_compatibility.yml

name: Python compatibility

on:
  push:
  pull_request:

jobs:
  test:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.11", "3.12", "3.13", "3.14"]

    steps:
      - uses: actions/checkout@v4

      - uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}

      - name: Install package
        run: |
          python -m pip install -U pip
          python -m pip install -e ".[dev]"

      - name: Check dependency consistency
        run: python -m pip check

      - name: Print resolved versions
        run: |
          python -c "import sys; print(sys.version)"
          python -c "import numpy, pandas, scipy, scanpy, decoupler; print('numpy', numpy.__version__); print('pandas', pandas.__version__); print('scipy', scipy.__version__); print('scanpy', scanpy.__version__); print('decoupler', decoupler.__version__)"

      - name: Run tests
        run: pytest