cppwg/.github/workflows/test-cells-conda.yml at e48bf20014cb9992a3fe2a438e7e4b06d484bf8a · Chaste/cppwg · GitHub

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name: test-cells-conda

on:
  workflow_dispatch:
  pull_request:
    branches:
      - "**"

jobs:
  test-cells-conda:
    runs-on: ubuntu-latest
    timeout-minutes: 90

    strategy:
      fail-fast: false
      max-parallel: 2
      matrix:
        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]

    concurrency:
      group: test-cells-conda-${{ github.ref }}-${{ matrix.python-version }}
      cancel-in-progress: true

    defaults:
      run:
        shell: bash -el {0} # -l needed to activate conda

    steps:
      - name: Staggered sleep
        run: |
          if [[ "${{ matrix.python-version }}" == '3.8' ]]; then
            echo "Sleeping for 3 minutes to stagger the start of the workflow..."
            sleep 3m
          fi

      - name: Checkout
        uses: actions/checkout@v6

      - name: Install system dependencies
        run: |
          sudo apt-get update
          sudo apt-get install castxml clang cmake git
          sudo apt-get install freeglut3-dev libglew-dev mesa-utils openbox xauth xorg

      - name: Setup Miniconda Python ${{ matrix.python-version }}
        uses: conda-incubator/setup-miniconda@v3
        with:
          auto-update-conda: true
          miniforge-version: latest
          python-version: ${{ matrix.python-version }}
          channels: conda-forge,defaults
          conda-remove-defaults: "false"

      - name: Install cppwg
        run: |
          python3 -m pip install --upgrade pip
          python3 -m pip install .

      - name: Install requirements
        run: |
          conda clean --all --yes
          conda config --prepend channels conda-forge
          conda config --set channel_priority strict
          conda config --get channels
          conda install --yes -vv --file conda/requirements.txt
        working-directory: examples/cells

      - name: Install conda-build tools
        run: |
          conda config --set channel_priority flexible
          conda config --get channels
          conda install --yes -vv boa conda-build conda-verify

      - name: Set config paths
        run: |
          echo "CMAKE_PREFIX_PATH=$CONDA_PREFIX;$CMAKE_PREFIX_PATH" >> $GITHUB_ENV
          echo "PETSC_DIR=$CONDA_PREFIX" >> $GITHUB_ENV
          echo "PETSC_ARCH=" >> $GITHUB_ENV
          echo "VTK_DIR=$CONDA_PREFIX" >> $GITHUB_ENV

      - name: Configure
        run: |
          mkdir build && cd build
          cmake ..
        working-directory: examples/cells

      - name: Regenerate wrappers
        run: |
          rm -rf dynamic/wrappers
          cd build
          make pycells_wrappers
        working-directory: examples/cells

      - name: Check for changes
        run: |
          git diff --exit-code dynamic/wrappers
          grep "Unknown class" build/cppwg.log
        working-directory: examples/cells

      - name: Build
        run: |
          conda build recipe -m variants/python${{ matrix.python-version }}.yaml --output-folder ./build
        working-directory: examples/cells/conda

      - name: Install
        run: conda install -c ./build pycells
        working-directory: examples/cells/conda

      - name: Test
        run: python3 -m unittest discover tests
        working-directory: examples/cells