Use uv to manage pytest tests instead of setup-python

Author: remlapmot

.github/workflows/python-app.yml

@@ -1,5 +1,3 @@
-# This workflow will install Python dependencies, run tests and lint with a single version of Python
-# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
 name: Test pySEQTarget
 
 on:
@@ -17,35 +15,30 @@ jobs:
     strategy:
       matrix:
         python-version: ["3.11", "3.12", "3.13", "3.14"]
-    
+
     steps:
     - uses: actions/checkout@v6
-    
+
+    - name: Install uv
+      uses: astral-sh/setup-uv@v7
+
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v6
-      with:
-        python-version: ${{ matrix.python-version }}
-    
+      run: uv python install ${{ matrix.python-version }}
+
     - name: Install dependencies
       run: |
-        python -m pip install --upgrade pip
-        pip install flake8 pytest pytest-cov
-        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
-    
-    - name: Install pySEQTarget package
-      run: |
-        pip install -e .
-    
+        uv venv --python ${{ matrix.python-version }}
+        uv pip install flake8 pytest pytest-cov
+        uv pip install -e .
+
     - name: Lint with flake8
       run: |
-        # stop the build if there are Python syntax errors or undefined names
-        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
-        # exit-zero treats all errors as warnings
-        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
-    
+        uv run flake8 . --exclude=.venv --count --select=E9,F63,F7,F82 --show-source --statistics
+        uv run flake8 . --exclude=.venv --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+
     - name: Test with pytest
       run: |
-        pytest tests/ -v --cov=pySEQTarget --cov-report=xml
+        uv run pytest tests/ -v --cov=pySEQTarget --cov-report=xml
 
     - name: Upload coverage reports to Codecov
       uses: codecov/codecov-action@v5