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@article{cui2021artificial,
title={Artificial intelligence and computational pathology},
author={Cui, Miao and Zhang, David Y},
journal={Laboratory Investigation},
volume={101},
number={4},
pages={412--422},
year={2021},
publisher={Nature Publishing Group}
}
@inproceedings{hou2016patch,
title={Patch-based convolutional neural network for whole slide tissue image classification},
author={Hou, Le and Samaras, Dimitris and Kurc, Tahsin M and Gao, Yi and Davis, James E and Saltz, Joel H},
booktitle={Proceedings of the IEEE conference on computer vision and pattern recognition},
pages={2424--2433},
year={2016}
}
@article{gurcan2009histopathological,
title={Histopathological image analysis: A review},
author={Gurcan, Metin N and Boucheron, Laura E and Can, Ali and Madabhushi, Anant and Rajpoot, Nasir M and Yener, Bulent},
journal={IEEE reviews in biomedical engineering},
volume={2},
pages={147--171},
year={2009},
publisher={IEEE}
}
@article{tizhoosh2018artificial,
title={Artificial intelligence and digital pathology: challenges and opportunities},
author={Tizhoosh, Hamid Reza and Pantanowitz, Liron},
journal={Journal of pathology informatics},
volume={9},
year={2018},
publisher={Wolters Kluwer--Medknow Publications}
}
@article{pati2021gandlf,
title={Gandlf: A generally nuanced deep learning framework for scalable end-to-end clinical workflows in medical imaging},
author={Pati, Sarthak and Thakur, Siddhesh P and Bhalerao, Megh and Thermos, Spyridon and Baid, Ujjwal and Gotkowski, Karol and Gonzalez, Camila and Guley, Orhun and Hamamci, Ibrahim Ethem and Er, Sezgin and others},
journal={arXiv preprint arXiv:2103.01006},
year={2021}
}
@article{grenko2020norm,
title = {Towards {Population}-{Based} {Histologic} {Stain} {Normalization} of {Glioblastoma}},
volume = {11992},
url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7394499/},
doi = {10.1007/978-3-030-46640-4_5},
urldate = {2022-01-06},
journal = {Brainlesion : glioma, multiple sclerosis, stroke and traumatic brain injuries. BrainLes (Workshop)},
author = {Grenko, Caleb M. and Viaene, Angela N. and Nasrallah, MacLean P. and Feldman, Michael D. and Akbari, Hamed and Bakas, Spyridon},
year = {2020},
pmid = {32743562},
pmcid = {PMC7394499},
pages = {44--56},
}
@article{hao2020prediction,
title = {{NIMG}-09. {PREDICTING} {OVERALL} {SURVIVAL} {OF} {GLIOBLASTOMA} {PATIENTS} {ON} {MULTI}-{INSTITUTIONAL} {HISTOPATHOLOGY} {STAINED} {SLIDES} {USING} {DEEP} {LEARNING} {AND} {POPULATION}-{BASED} {NORMALIZATION}},
volume = {22},
issn = {1522-8517},
url = {https://doi.org/10.1093/neuonc/noaa215.622},
doi = {10.1093/neuonc/noaa215.622},
number = {Supplement\_2},
urldate = {2022-01-06},
journal = {Neuro-Oncology},
author = {Hao, Jie and Agraz, Jose and Grenko, Caleb and Park, Ji Won and Viaene, Angela and Nasrallah, Maclean and Kim, Dokyoon and Bakas, Spyridon},
month = nov,
year = {2020},
pages = {ii148},
}
@techreport{varn2021longitudinal,
title = {Longitudinal analysis of diffuse glioma reveals cell state dynamics at recurrence associated with changes in genetics and the microenvironment},
url = {https://www.biorxiv.org/content/10.1101/2021.05.03.442486v1},
language = {en},
urldate = {2022-01-06},
author = {Varn, Frederick S. and Johnson, Kevin C. and Wade, Taylor E. and Malta, Tathiane M. and Sabedot, Thais S. and Barthel, Floris P. and Kim, Hoon and Ahmed, Nazia and Datta, Indrani and Barnholtz-Sloan, Jill S. and Bakas, Spyridon and D’Angelo, Fulvio and Gan, Hui K. and Garofano, Luciano and Huse, Jason T. and Khasraw, Mustafa and Kocakavuk, Emre and Migliozzi, Simona and Ormond, D. Ryan and Paek, Sun Ha and Meir, Erwin G. Van and Walenkamp, Annemiek M. E. and Watts, Colin and Weller, Michael and Weiss, Tobias and Wesseling, Pieter and Stead, Lucy F. and Poisson, Laila M. and Noushmehr, Houtan and Iavarone, Antonio and Verhaak, Roel GW and Consortium, The GLASS},
month = may,
year = {2021},
doi = {10.1101/2021.05.03.442486},
note = {Company: Cold Spring Harbor Laboratory
Distributor: Cold Spring Harbor Laboratory
Label: Cold Spring Harbor Laboratory
Section: New Results
Type: article},
pages = {2021.05.03.442486},
}
@article{varn2021epco,
title = {{EPCO}-09. {LONGITUDINAL} {ANALYSIS} {OF} {DIFFUSE} {GLIOMA} {REVEALS} {CELL} {STATE} {DYNAMICS} {AT} {RECURRENCE} {ASSOCIATED} {WITH} {CHANGES} {IN} {GENETICS} {AND} {THE} {MICROENVIRONMENT}},
volume = {23},
issn = {1522-8517},
url = {https://doi.org/10.1093/neuonc/noab196.008},
doi = {10.1093/neuonc/noab196.008},
number = {Supplement\_6},
urldate = {2022-01-06},
journal = {Neuro-Oncology},
author = {Varn, Frederick and Johnson, Kevin and Wade, Taylor and Malta, Tathiane and Sabedot, Thais and Barthel, Floris and Kim, Hoon and Ahmed, Nazia and Datta, Indrani and Barnholtz-Sloan, Jill and Bakas, Spyridon and D'Angelo, Fulvio and Gan, Hui and Garofano, Luciano and Huse, Jason and Khasraw, Mustafa and Kocakavuk, Emre and Migliozzi, Simona and Ormond, David and Paek, Sun Ha and Van Meir, Erwin and Walenkamp, Annemiek and Watts, Colin and Weller, Michael and Weiss, Tobias and Wesseling, Pieter and Stead, Lucy and Poisson, Laila and Noushmehr, Houtan and Iavarone, Antonio and Verhaak, Roel},
month = nov,
year = {2021},
pages = {vi3},
}