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CLAUDE.md

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ClickDV Project Context

Instructions

Follow all global preferences in ~/CLAUDE.md, plus the project-specific additions below.

Project Overview

GLM project linking Poisson click input data from rats to decision variable outputs. This is a computational neuroscience project for the Brody-Daw lab rotation.

Research Goals

  • Extract decision variables from spike data (starting with session A324)
  • Access and analyze click times from behavioral data
  • Develop GLM to link click inputs to decision variables DV(t)
  • Investigate how GLM weights differ between sessions
  • Explore direct link between click inputs and decision making

Project-Specific Overrides & Additions

Communication Style (extends global)

  • No unnecessary praise - I want thought from a good assistant, not a sycophant
  • Give explanations of technical concepts

Project Context (overrides global)

  • Focus on computational neuroscience and GLM modeling (not physics)
  • Prioritize accuracy and reproducibility
  • Use proper statistical analysis methods
  • Generate publication-quality outputs

Programming Education Goals (extends global)

  • Introduce advanced statistical modeling concepts
  • Explain GLM theory and implementation
  • Connect theory to real-world neuroscience applications

Important Instructions

  • Do what has been asked; nothing more, nothing less
  • NEVER create files unless absolutely necessary for achieving the goal
  • ALWAYS prefer editing an existing file to creating a new one
  • NEVER proactively create documentation files unless explicitly requested