tkoi/_pkgdown.yml at main · BaranziniLab/tkoi · GitHub

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template:
  bootstrap: 5
  bootswatch: flatly
  logo: man/figures/logo.png
  bslib:
    pkgdown-nav-height: 60px

home:
  title: "tKOI"
  tagline: "Transcriptomic Knowledge-Graph Omics Integration"
  links:
    - text: GitHub
      href: https://github.com/Broccolito/tkoi

navbar:
  structure:
    left:
      - home
      - reference
      - articles
  components:
    articles:
      text: Vignettes
      href: articles/index.html

reference:
  - title: Main Functions
    desc: Core methods for network-based transcriptomic analysis
    contents:
      - run_tkoi
      - run_gene_enrichment
      - get_neighboring_nodes
      - make_gene_exploration_plot
      - export_gene_exploration_data
      - export_network_summary_statistics
      - visualize_topn
      - plot_network
      - compute_network_enrichment

  - title: Data and Annotations
    desc: Annotation datasets used for node interpretation
    contents:
      - tkoi_net
      - anatomy_annotation
      - celltype_annotation
      - clinicallab_annotation
      - complex_annotation
      - compound_annotation
      - disease_annotation
      - ec_annotation
      - go_annotation
      - mirna_annotation
      - pathway_annotation
      - protein_annotation
      - proteindomain_annotation
      - proteinfamily_annotation
      - pwgroup_annotation
      - reaction_annotation
      - genes
      - human_metabolites

articles:
  - title: Getting Started
    contents:
      - getting-started-with-tkoi

news:
  one_page: true