pom.xml

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>

	<properties>
		<bundle.symbolicName>social-network-app</bundle.symbolicName>
		<bundle.namespace>org.baderlab.csapps.socialnetwork</bundle.namespace>
		<cytoscape.api.version>3.2.0</cytoscape.api.version>
		<maven-bundle-plugin.version>2.4.0</maven-bundle-plugin.version>
		<osgi.api.version>4.2.0</osgi.api.version>
	</properties>


	<groupId>org.baderlab.csapps.socialnetwork</groupId>
	<artifactId>social-network-app</artifactId>
	<name>${bundle.symbolicName}</name>

	<repositories>
		<repository>
			<id>cytoscape_snapshots</id>
			<snapshots>
				<enabled>true</enabled>
			</snapshots>
			<releases>
				<enabled>false</enabled>
			</releases>
			<name>Cytoscape Snapshots</name>
			<url>http://code.cytoscape.org/nexus/content/repositories/snapshots/</url>
		</repository>
		<repository>
			<id>cytoscape_releases</id>
			<snapshots>
				<enabled>false</enabled>
			</snapshots>
			<releases>
				<enabled>true</enabled>
			</releases>
			<name>Cytoscape Releases</name>
			<url>http://code.cytoscape.org/nexus/content/repositories/releases/</url>
		</repository>
	</repositories>

	<version>1.3.1</version>
	<build>
		<finalName>${project.artifactId}-${project.version}-r${git.commit.id.abbrev}_${buildNumber}_${git.branch}</finalName>
	
		<plugins>
			<plugin>
				<inherited>true</inherited>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-compiler-plugin</artifactId>
				<version>3.0</version>
				<configuration>
					<source>1.6</source>
					<target>1.6</target>
					<optimize>true</optimize>
					<showWarnings>true</showWarnings>
					<showDeprecation>true</showDeprecation>
					<compilerArguments>
						<Xmaxwarns>10000</Xmaxwarns>
						<Xmaxerrs>10000</Xmaxerrs>
					</compilerArguments>
				</configuration>
			</plugin>
			<!-- make sure we set the encoding for copying the resources -->
			<plugin>
        			<groupId>org.apache.maven.plugins</groupId>
        			<artifactId>maven-resources-plugin</artifactId>
        			<version>2.6</version>
        			<configuration>
   <!--       			<encoding>UTF-8</encoding>
        -->  			<nonFilteredFileExtensions>
            				<nonFilteredFileExtension>sn</nonFilteredFileExtension>
          			</nonFilteredFileExtensions>
        			</configuration>
      		</plugin>
			
			<plugin>
				<groupId>org.apache.felix</groupId>
				<artifactId>maven-bundle-plugin</artifactId>
				<version>${maven-bundle-plugin.version}</version>
				<extensions>true</extensions>
				<configuration>
					<instructions>
						<Bundle-SymbolicName>${bundle.symbolicName}</Bundle-SymbolicName>
						<Bundle-Version>${project.version}</Bundle-Version>
						<Private-Package>${bundle.namespace}.*</Private-Package>
						<Bundle-Activator>${bundle.namespace}.CyActivator</Bundle-Activator>
						<Export-Package>!${bundle.namespace}.*;version="${project.version}"</Export-Package>
						<Embed-Dependency>*;scope=compile|runtime;inline=false;artifactId=!junit|swing-app-api|swing-application-api|layout-api|org.osgi.core|session-api|service-api|work-api|application-api|group-api|swing-util-api</Embed-Dependency>
						<Import-Package>*;resolution:=optional</Import-Package>
					</instructions>
				</configuration>
			</plugin>
			<plugin>
        				<groupId>org.codehaus.mojo</groupId>
        				<artifactId>buildnumber-maven-plugin</artifactId>
        				<version>1.3</version>
        				<executions>
          				<execution>
            					<phase>validate</phase>
            					<goals>
              					<goal>create</goal>
            					</goals>
          				</execution>
        				</executions>
        				<configuration>
          				<doCheck>true</doCheck>
          				<doUpdate>false</doUpdate>
          				<format>{0,number}</format>
          				<items>
            					<item>buildNumber</item>
          				</items>
        				</configuration>
      			  		</plugin>
      			  		<plugin>
        				<groupId>org.apache.maven.plugins</groupId>
        				<artifactId>maven-compiler-plugin</artifactId>
        				<version>3.0</version>
        				<configuration>
          				<source>1.6</source>
          				<target>1.6</target>
        				</configuration>
      			  </plugin> 
      			    <plugin>
                <groupId>pl.project13.maven</groupId>
                <artifactId>git-commit-id-plugin</artifactId>
                <version>2.1.5</version>
                <executions>
                    <execution>
                        <goals>
                            <goal>revision</goal>
                         </goals>
                    </execution>
                </executions>

                <configuration>
                    <!-- that's the default value, you don't have to set it -->
                    <prefix>git</prefix>

                    <!-- that's the default value -->
                    <dateFormat>dd.MM.yyyy '@' HH:mm:ss z</dateFormat>

                    <!-- true is default here, it prints some more information during the build -->
                    <verbose>false</verbose>

                    <!--
                        If you'd like to tell the plugin where your .git directory is,
                        use this setting, otherwise we'll perform a search trying to
                        figure out the right directory. It's better to add it explicite IMHO.
                    -->
                    <dotGitDirectory>${project.basedir}/../.git</dotGitDirectory>

                    <!-- ALTERNATE SETUP - GENERATE FILE -->                    
                    <!--
                        this is true by default; You may want to set this to false, if the plugin should run inside a
                        <packaging>pom</packaging> project. Most projects won't need to override this property.
                     -->
                    <skipPoms>true</skipPoms>

                    <!-- this is false by default, forces the plugin to generate the git.properties file -->
                    <generateGitPropertiesFile>false</generateGitPropertiesFile>

                    <!-- The path for the to be generated properties file, it's relative to ${project.basedir} -->
                    <generateGitPropertiesFilename>src/main/resources/revision.txt</generateGitPropertiesFilename>

                    <!-- true by default, controls whether the plugin will fail when no .git directory is found, when set to false the plugin will just skip execution -->
                    <!-- @since 2.0.4 -->
                    <failOnNoGitDirectory>false</failOnNoGitDirectory>

                    <!-- @since 2.1.0 -->
                    <!-- 
                        read up about git-describe on the in man, or it's homepage - it's a really powerful versioning helper 
                        and the recommended way to use git-commit-id-plugin. The configuration bellow is optional, 
                        by default describe will run "just like git-describe on the command line", even though it's a JGit reimplementation.
                    -->
                    <gitDescribe>

                        <!-- don't generate the describe property -->
                        <skip>false</skip>

                        <!-- 
                            if no tag was found "near" this commit, just print the commit's id instead, 
                            helpful when you always expect this field to be not-empty 
                        -->
                        <always>false</always>
                        <!--
                             how many chars should be displayed as the commit object id? 
                             7 is git's default, 
                             0 has a special meaning (see end of this README.md), 
                             and 40 is the maximum value here 
                        -->
                        <abbrev>7</abbrev>

                        <!-- when the build is triggered while the repo is in "dirty state", append this suffix -->
                        <dirty>-dirty</dirty>

                        <!-- 
                             always print using the "tag-commits_from_tag-g_commit_id-maybe_dirty" format, even if "on" a tag. 
                             The distance will always be 0 if you're "on" the tag. 
                        -->
                        <forceLongFormat>false</forceLongFormat>
                    </gitDescribe>
                </configuration>

            </plugin>     			  	
		</plugins>
    		 <resources>
            <resource>
                <directory>src/main/resources</directory>
                <filtering>true</filtering>
                <includes>
                    <include>**/*.props</include>
                    <include>**/*.xml</include>
                    <include>**/*.txt</include>
                </includes>
            </resource>
            <resource>
                <directory>src/main/resources</directory>
                <filtering>false</filtering>
                <includes>
                    <include>**/*.gif</include>                
                    <include>**/*.png</include>
                </includes>
            </resource>
        </resources> 
	</build>

	<dependencies>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>application-api</artifactId>
			<version>${cytoscape.api.version}</version>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>work-api</artifactId>
			<version>${cytoscape.api.version}</version>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>service-api</artifactId>
			<version>${cytoscape.api.version}</version>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>session-api</artifactId>
			<version>${cytoscape.api.version}</version>
		</dependency>
		<dependency>
			<groupId>org.osgi</groupId>
			<artifactId>org.osgi.core</artifactId>
			<version>${osgi.api.version}</version>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>layout-api</artifactId>
			<version>${cytoscape.api.version}</version>
			<type>bundle</type>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>swing-application-api</artifactId>
			<version>${cytoscape.api.version}</version>
			<type>bundle</type>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>swing-app-api</artifactId>
			<version>${cytoscape.api.version}</version>
		</dependency>
		<dependency>
    		<groupId>org.cytoscape</groupId>
    		<artifactId>swing-util-api</artifactId>
    		<version>${cytoscape.api.version}</version>
		</dependency>
		<dependency>
			<groupId>junit</groupId>
			<artifactId>junit</artifactId>
			<version>4.11</version>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.apache.commons</groupId>
			<artifactId>commons-math</artifactId>
			<version>2.2</version>
		</dependency>
		<dependency>
			<groupId>org.apache.poi</groupId>
			<artifactId>poi-ooxml</artifactId>
			<version>3.8</version>
		</dependency>
		<dependency>
			<groupId>org.apache.poi</groupId>
			<artifactId>poi</artifactId>
			<version>3.8</version>
		</dependency>
		<dependency>
			<groupId>org.apache.poi</groupId>
			<artifactId>poi-ooxml-schemas</artifactId>
			<version>3.8</version>
		</dependency>
		<dependency>
			<groupId>org.apache.xmlbeans</groupId>
			<artifactId>xmlbeans</artifactId>
			<version>2.6.0</version>
		</dependency>
		<dependency>
			<groupId>commons-io</groupId>
			<artifactId>commons-io</artifactId>
			<version>2.4</version>
		</dependency>
		<dependency>
			<groupId>xerces</groupId>
			<artifactId>xercesImpl</artifactId>
			<version>2.12.0</version>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>group-api</artifactId>
			<version>${cytoscape.api.version}</version>
			<type>bundle</type>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>swing-util-api</artifactId>
			<version>${cytoscape.api.version}</version>
			<type>bundle</type>
		</dependency>
		<dependency>
			<groupId>org.mockito</groupId>
			<artifactId>mockito-core</artifactId>
			<version>2.23.4</version>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.apache.httpcomponents</groupId>
			<artifactId>httpclient</artifactId>
			<version>4.5</version>
		</dependency>
		<dependency>
			<groupId>org.apache.httpcomponents</groupId>
			<artifactId>httpcore</artifactId>
			<version>4.4.1</version>
		</dependency>
		<dependency>
			<groupId>commons-logging</groupId>
			<artifactId>commons-logging</artifactId>
			<version>1.2</version>
		</dependency>
		<dependency>
			<groupId>commons-codec</groupId>
			<artifactId>commons-codec</artifactId>
			<version>1.9</version>
		</dependency>
	</dependencies>
	
	<packaging>bundle</packaging>
	
	<scm>
		<connection>scm:git:git://github.com/BaderLab/SocialNetworkApp.git</connection>
		<url>https://github.com/BaderLab/SocialNetworkApp</url>
		<developerConnection>scm:git:git@github.com:BaderLab/SocialNetworkApp.git</developerConnection>
	</scm>	
	<description>Social Network app is a method to visualize and interpret social networks from publication records.</description>
</project>