mkvtree: Illegal character '>' in file

[gracelaimail]

Hi
I tried to analysis the CRISPR array of a 6 complete E.coli genome.
4 working , but 2 showed mkvtree /vmatch errors.
Seems it is related to number of contigs in the file.

1/GCF_000005845.2_ASM584v2_genomic.ID.fasta -works fine
https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000005845.2/
2/GCF_000007445.1_ASM744v1_genomic.ID.fasta -works fine
https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000007445.1/
3/GCF_000008865.2_ASM886v2_genomic.ID.fasta - not working
https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000008865.2/
4/GCF_000009565.1_ASM956v1_genomic.ID.fasta -works fine
https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000009565.1/
5/GCF_000010245.2_ASM1024v1_genomic.ID.fasta -works fine
https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000010245.2/
6/GCF_000010385.1_ASM1038v1_genomic.ID.fasta -not working
https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000010385.1/

                            Executing file 1 out of 6 (GCF_000005845.2_ASM584v2_genomic.fna)

1. Run initial array detection

2. Refine detected arrays

3. Evaluate candidates

4. Enhance evaluated arrays

5. Complement arrays with additional info

6. Write down the results

                            Executing file 2 out of 6(GCF_000007445.1_ASM744v1_genomic.fna
   

7. Run initial array detection

8. Refine detected arrays

9. Evaluate candidates

10. Enhance evaluated arrays

11. Complement arrays with additional info

12. Write down the results

                             Executing file 3 out of 6(GCF_000008865.2_ASM886v2_genomic.fna)
    

13. Run initial array detection
    mkvtree: Illegal character '>' in file "new_input.fa" line 2
    vmatch: cannot open file "new_input.fa.prj": No such file or directory

14. Refine detected arrays

15. Evaluate candidates

16. Enhance evaluated arrays

17. Complement arrays with additional info

18. Write down the results

                             Executing file 4 out of 6 (GCF_000009565.1_ASM956v1_genomic.fna)
    

19. Run initial array detection

20. Refine detected arrays

21. Evaluate candidates

22. Enhance evaluated arrays

23. Complement arrays with additional info

24. Write down the results

                             Executing file 5 out of 6 (GCF_000010245.2_ASM1024v1_genomic.fna)
    

25. Run initial array detection

26. Refine detected arrays

27. Evaluate candidates

28. Enhance evaluated arrays

29. Complement arrays with additional info

30. Write down the results

                             Executing file 6 out of 6 (GCF_000010385.1_ASM1038v1_genomic.fna)
    

31. Run initial array detection
    mkvtree: Illegal character '>' in file "new_input.fa" line 2
    vmatch: cannot open file "new_input.fa.prj": No such file or directory

32. Refine detected arrays

33. Evaluate candidates

34. Enhance evaluated arrays

35. Complement arrays with additional info

36. Write down the results

Thank you
G