Dear @trvinh,
it's me again Bastian. Have you ever tried to use a json file generated with fas.parseAnno in fDOG? My problem is actually that fas.doAnno is super slow, even though I'm using tens (or even >100) of cpus. So I imagined to use InterProScan to first generate a tsv file, which I then parsed into json format using FAS. This works with caveats. But fDOG gives me zeros for all FAS scores, albeit it finds the same orthologs as for an annotation done with fas.doAnno using the same genome assembly. I hope you get what I mean.
Cheers @bheimbu
Dear @trvinh,
it's me again Bastian. Have you ever tried to use a
jsonfile generated withfas.parseAnnoin fDOG? My problem is actually thatfas.doAnnois super slow, even though I'm using tens (or even >100) of cpus. So I imagined to use InterProScan to first generate atsvfile, which I then parsed intojsonformat using FAS. This works with caveats. But fDOG gives me zeros for all FAS scores, albeit it finds the same orthologs as for an annotation done withfas.doAnnousing the same genome assembly. I hope you get what I mean.Cheers @bheimbu