Fix Used For filter to match 'nucleus-BM workflow' instead of 'nucleus-BM workflow dataset'

smishra3 · smishra3 · commit 78129d07f8c8 · 2026-02-05T12:38:31.000-08:00
diff --git a/EMT_data_analysis/analysis_scripts/Nuclei_localization.py b/EMT_data_analysis/analysis_scripts/Nuclei_localization.py
@@ -434,7 +434,7 @@ def run_nuclei_localization(
     )
 
     # Filter to movies used in nucleus-BM workflow
-    df_cond = df_manifest[df_manifest['Used For'].str.contains("nucleus-BM workflow dataset", na=False)]
+    df_cond = df_manifest[df_manifest['Used For'].str.contains("nucleus-BM workflow", na=False)]
     data_ids = pd.unique(df_cond['Data ID'])
 
     print(f"Processing {len(data_ids)} movies with CollagenIV segmentations.")

Original file line number	Diff line number	Diff line change
`@@ -434,7 +434,7 @@ def run_nuclei_localization(`
`434`	`434`	`)`
`435`	`435`
`436`	`436`	`# Filter to movies used in nucleus-BM workflow`
`437`		`- df_cond = df_manifest[df_manifest['Used For'].str.contains("nucleus-BM workflow dataset", na=False)]`
	`437`	`+ df_cond = df_manifest[df_manifest['Used For'].str.contains("nucleus-BM workflow", na=False)]`
`438`	`438`	`data_ids = pd.unique(df_cond['Data ID'])`
`439`	`439`
`440`	`440`	`print(f"Processing {len(data_ids)} movies with CollagenIV segmentations.")`