EMT_data_analysis/pyproject.toml at reSub-v1 · AllenCell/EMT_data_analysis · GitHub

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[project]
name = "EMT_data_analysis"
version = "0.0.0"
description = "EMT data analysis scripts"
authors = [
    {email = "cells@alleninstitute.org"},
]
dependencies = [
    "s3fs>=2025.9.0",
    "numpy<=1.26.4",
    "pandas>=2.0.0",
    "scipy>=1.13.1",
    "bioio>=3.0.0",
    "bioio-ome-tiff>=1.4.0",
    "bioio-ome-zarr>=3.0.3",
    "tqdm>=4.66.4",
    "matplotlib>=3.9.1",
    "seaborn>=0.13.2",
    "plotly>=5.23.0",
    "cgal==6.0.1.post202410241521",
    "trimesh>=4.9.0",
    "vtk==9.3.0",
    "point-cloud-utils==0.30.4",
    "pyvista>=0.43.10,<0.44",
    "rtree>=1.4.1",
    "scikit_posthocs>=0.9.0",
    "kaleido>=0.2.1,!=0.2.1.post1,<0.4.0",  # kaleido 0.2.1.post1 is published incorrectly
    "joblib>=1.3.0",
    "quilt3>=6.0.0",
]
requires-python = ">=3.11,<3.12"
readme = "README.md"
license = {file = "LICENSE"}

[project.optional-dependencies]
internal = [

]

[tool.setuptools.packages.find]
include = ["EMT_data_analysis*"]

[tool.pdm]