Step 3 should keep the root output in split wf mode (#1584)

Author: chiarazampolli

DATA/production/configurations/asyncReco/async_pass.sh

@@ -600,11 +600,16 @@ else
     echo "extra args are $ARGS_EXTRA_PROCESS_o2_global_track_cluster_reader"
     READ_TRACKS="ALLSINGLE"
     READ_CLUSTERS="ALLSINGLE"
-    env $SETTING_ROOT_OUTPUT IS_SIMULATED_DATA=0 WORKFLOWMODE=print TFDELAY=$TFDELAYSECONDS WORKFLOW_DETECTORS=ALL WORKFLOW_DETECTORS_EXCLUDE=$DETECTORS_EXCLUDE WORKFLOW_DETECTORS_USE_GLOBAL_READER_TRACKS=$READ_TRACKS WORKFLOW_DETECTORS_USE_GLOBAL_READER_CLUSTERS=$READ_CLUSTERS WORKFLOW_DETECTORS_EXCLUDE_GLOBAL_READER_TRACKS=HMP WORKFLOW_DETECTORS_EXCLUDE_QC=CPV,$DETECTORS_EXCLUDE ./run-workflow-on-inputlist.sh $INPUT_TYPE list.list >> workflowconfig.log
+    if [[ "$ALIEN_JDL_KEEPQCSEPARATE" == "1" ]]; then
+      STEP_3_ROOT_OUTPUT="DISABLE_ROOT_OUTPUT=0"
+    else
+      STEP_3_ROOT_OUTPUT=$SETTING_ROOT_OUTPUT
+    fi
+    env $STEP_3_ROOT_OUTPUT IS_SIMULATED_DATA=0 WORKFLOWMODE=print TFDELAY=$TFDELAYSECONDS WORKFLOW_DETECTORS=ALL WORKFLOW_DETECTORS_EXCLUDE=$DETECTORS_EXCLUDE WORKFLOW_DETECTORS_USE_GLOBAL_READER_TRACKS=$READ_TRACKS WORKFLOW_DETECTORS_USE_GLOBAL_READER_CLUSTERS=$READ_CLUSTERS WORKFLOW_DETECTORS_EXCLUDE_GLOBAL_READER_TRACKS=HMP WORKFLOW_DETECTORS_EXCLUDE_QC=CPV,$DETECTORS_EXCLUDE ./run-workflow-on-inputlist.sh $INPUT_TYPE list.list >> workflowconfig.log
     # run it
     if [[ "0$RUN_WORKFLOW" != "00" ]]; then
       timeStart=`date +%s`
-      time env $SETTING_ROOT_OUTPUT IS_SIMULATED_DATA=0 WORKFLOWMODE=run TFDELAY=$TFDELAYSECONDS WORKFLOW_DETECTORS=ALL WORKFLOW_DETECTORS_EXCLUDE=$DETECTORS_EXCLUDE WORKFLOW_DETECTORS_USE_GLOBAL_READER_TRACKS=$READ_TRACKS WORKFLOW_DETECTORS_USE_GLOBAL_READER_CLUSTERS=$READ_CLUSTERS WORKFLOW_DETECTORS_EXCLUDE_GLOBAL_READER_TRACKS=HMP WORKFLOW_DETECTORS_EXCLUDE_QC=CPV,$DETECTORS_EXCLUDE ./run-workflow-on-inputlist.sh $INPUT_TYPE list.list
+      time env $STEP_3_ROOT_OUTPUT IS_SIMULATED_DATA=0 WORKFLOWMODE=run TFDELAY=$TFDELAYSECONDS WORKFLOW_DETECTORS=ALL WORKFLOW_DETECTORS_EXCLUDE=$DETECTORS_EXCLUDE WORKFLOW_DETECTORS_USE_GLOBAL_READER_TRACKS=$READ_TRACKS WORKFLOW_DETECTORS_USE_GLOBAL_READER_CLUSTERS=$READ_CLUSTERS WORKFLOW_DETECTORS_EXCLUDE_GLOBAL_READER_TRACKS=HMP WORKFLOW_DETECTORS_EXCLUDE_QC=CPV,$DETECTORS_EXCLUDE ./run-workflow-on-inputlist.sh $INPUT_TYPE list.list
       exitcode=$?
       timeEnd=`date +%s`
       timeUsed=$(( $timeUsed+$timeEnd-$timeStart ))